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The papain-like protease determines a virulence trait that varies among members of the SARS-coronavirus species

Identifieur interne : 000C18 ( Main/Exploration ); précédent : 000C17; suivant : 000C19

The papain-like protease determines a virulence trait that varies among members of the SARS-coronavirus species

Auteurs : Daniela Niemeyer [Allemagne] ; Kirstin Mösbauer [Allemagne] ; Eva M. Klein [Allemagne] ; Andrea Sieberg [Allemagne] ; Robert C. Mettelman [États-Unis] ; Anna M. Mielech [États-Unis] ; Ronald Dijkman [Suisse] ; Susan C. Baker [États-Unis] ; Christian Drosten [Allemagne] ; Marcel A. Müller [Allemagne]

Source :

RBID : PMC:6171950

Descripteurs français

English descriptors

Abstract

SARS-coronavirus (CoV) is a zoonotic agent derived from rhinolophid bats, in which a plethora of SARS-related, conspecific viral lineages exist. Whereas the variability of virulence among reservoir-borne viruses is unknown, it is generally assumed that the emergence of epidemic viruses from animal reservoirs requires human adaptation. To understand the influence of a viral factor in relation to interspecies spillover, we studied the papain-like protease (PLP) of SARS-CoV. This key enzyme drives the early stages of infection as it cleaves the viral polyprotein, deubiquitinates viral and cellular proteins, and antagonizes the interferon (IFN) response. We identified a bat SARS-CoV PLP, which shared 86% amino acid identity with SARS-CoV PLP, and used reverse genetics to insert it into the SARS-CoV genome. The resulting virus replicated like SARS-CoV in Vero cells but was suppressed in IFN competent MA-104 (3.7-fold), Calu-3 (2.6-fold) and human airway epithelial cells (10.3-fold). Using ectopically-expressed PLP variants as well as full SARS-CoV infectious clones chimerized for PLP, we found that a protease-independent, anti-IFN function exists in SARS-CoV, but not in a SARS-related, bat-borne virus. This PLP-mediated anti-IFN difference was seen in primate, human as well as bat cells, thus independent of the host context. The results of this study revealed that coronavirus PLP confers a variable virulence trait among members of the species SARS-CoV, and that a SARS-CoV lineage with virulent PLPs may have pre-existed in the reservoir before onset of the epidemic.


Url:
DOI: 10.1371/journal.ppat.1007296
PubMed: 30248143
PubMed Central: 6171950


Affiliations:


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Le document en format XML

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<wicri:regionArea>Department of Microbiology and Immunology, Loyola University of Chicago, Maywood, IL</wicri:regionArea>
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<region type="state">Illinois</region>
<settlement type="city">Chicago</settlement>
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<name sortKey="Drosten, Christian" sort="Drosten, Christian" uniqKey="Drosten C" first="Christian" last="Drosten">Christian Drosten</name>
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<addr-line>Institute of Virology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Berlin, Germany</addr-line>
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<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Institute of Virology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Berlin</wicri:regionArea>
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<region type="land" nuts="3">Berlin</region>
<settlement type="city">Berlin</settlement>
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<addr-line>Institute of Virology, University of Bonn Medical Centre, Bonn, Germany</addr-line>
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<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Institute of Virology, University of Bonn Medical Centre, Bonn</wicri:regionArea>
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<region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region>
<region type="district" nuts="2">District de Cologne</region>
<settlement type="city">Bonn</settlement>
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<affiliation wicri:level="3">
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<addr-line>German Centre for Infection Research, associated partner Charité, Berlin, Germany</addr-line>
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<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>German Centre for Infection Research, associated partner Charité, Berlin</wicri:regionArea>
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<region type="land" nuts="3">Berlin</region>
<settlement type="city">Berlin</settlement>
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<author>
<name sortKey="Muller, Marcel A" sort="Muller, Marcel A" uniqKey="Muller M" first="Marcel A." last="Müller">Marcel A. Müller</name>
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<addr-line>Institute of Virology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Berlin, Germany</addr-line>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Institute of Virology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Berlin</wicri:regionArea>
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<region type="land" nuts="3">Berlin</region>
<settlement type="city">Berlin</settlement>
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<affiliation wicri:level="3">
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<addr-line>Institute of Virology, University of Bonn Medical Centre, Bonn, Germany</addr-line>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Institute of Virology, University of Bonn Medical Centre, Bonn</wicri:regionArea>
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<region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region>
<region type="district" nuts="2">District de Cologne</region>
<settlement type="city">Bonn</settlement>
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</affiliation>
<affiliation wicri:level="3">
<nlm:aff id="aff003">
<addr-line>German Centre for Infection Research, associated partner Charité, Berlin, Germany</addr-line>
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<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>German Centre for Infection Research, associated partner Charité, Berlin</wicri:regionArea>
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<region type="land" nuts="3">Berlin</region>
<settlement type="city">Berlin</settlement>
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</analytic>
<series>
<title level="j">PLoS Pathogens</title>
<idno type="ISSN">1553-7366</idno>
<idno type="eISSN">1553-7374</idno>
<imprint>
<date when="2018">2018</date>
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<keywords scheme="KwdEn" xml:lang="en">
<term>Amino Acid Sequence</term>
<term>Animals</term>
<term>Chiroptera (virology)</term>
<term>Chlorocebus aethiops</term>
<term>Cysteine Endopeptidases (genetics)</term>
<term>Cysteine Endopeptidases (physiology)</term>
<term>Disease Reservoirs (virology)</term>
<term>HEK293 Cells</term>
<term>Host Specificity</term>
<term>Host-Pathogen Interactions</term>
<term>Humans</term>
<term>Interferons (antagonists & inhibitors)</term>
<term>Phylogeny</term>
<term>SARS Virus (enzymology)</term>
<term>SARS Virus (genetics)</term>
<term>SARS Virus (pathogenicity)</term>
<term>Sequence Homology, Amino Acid</term>
<term>Severe Acute Respiratory Syndrome (epidemiology)</term>
<term>Severe Acute Respiratory Syndrome (virology)</term>
<term>Ubiquitin (metabolism)</term>
<term>Vero Cells</term>
<term>Viral Proteins (genetics)</term>
<term>Viral Proteins (physiology)</term>
<term>Virulence (genetics)</term>
<term>Virulence (physiology)</term>
<term>Virus Replication (genetics)</term>
<term>Virus Replication (physiology)</term>
<term>Zoonoses (epidemiology)</term>
<term>Zoonoses (virology)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr">
<term>Animaux</term>
<term>Cellules HEK293</term>
<term>Cellules Vero</term>
<term>Chiroptera (virologie)</term>
<term>Cysteine endopeptidases (génétique)</term>
<term>Cysteine endopeptidases (physiologie)</term>
<term>Humains</term>
<term>Interactions hôte-pathogène</term>
<term>Interférons (antagonistes et inhibiteurs)</term>
<term>Phylogénie</term>
<term>Protéines virales (génétique)</term>
<term>Protéines virales (physiologie)</term>
<term>Réplication virale (génétique)</term>
<term>Réplication virale (physiologie)</term>
<term>Réservoirs d'agents pathogènes (virologie)</term>
<term>Similitude de séquences d'acides aminés</term>
<term>Spécificité d'hôte</term>
<term>Syndrome respiratoire aigu sévère (virologie)</term>
<term>Syndrome respiratoire aigu sévère (épidémiologie)</term>
<term>Séquence d'acides aminés</term>
<term>Ubiquitine (métabolisme)</term>
<term>Virulence (génétique)</term>
<term>Virulence (physiologie)</term>
<term>Virus du SRAS (enzymologie)</term>
<term>Virus du SRAS (génétique)</term>
<term>Virus du SRAS (pathogénicité)</term>
<term>Zoonoses (virologie)</term>
<term>Zoonoses (épidémiologie)</term>
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<term>Interferons</term>
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<term>Cysteine Endopeptidases</term>
<term>Viral Proteins</term>
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<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en">
<term>Ubiquitin</term>
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<keywords scheme="MESH" type="chemical" qualifier="physiology" xml:lang="en">
<term>Cysteine Endopeptidases</term>
<term>Viral Proteins</term>
</keywords>
<keywords scheme="MESH" qualifier="antagonistes et inhibiteurs" xml:lang="fr">
<term>Interférons</term>
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<keywords scheme="MESH" qualifier="enzymologie" xml:lang="fr">
<term>Virus du SRAS</term>
</keywords>
<keywords scheme="MESH" qualifier="enzymology" xml:lang="en">
<term>SARS Virus</term>
</keywords>
<keywords scheme="MESH" qualifier="epidemiology" xml:lang="en">
<term>Severe Acute Respiratory Syndrome</term>
<term>Zoonoses</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en">
<term>SARS Virus</term>
<term>Virulence</term>
<term>Virus Replication</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr">
<term>Cysteine endopeptidases</term>
<term>Protéines virales</term>
<term>Réplication virale</term>
<term>Virulence</term>
<term>Virus du SRAS</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr">
<term>Ubiquitine</term>
</keywords>
<keywords scheme="MESH" qualifier="pathogenicity" xml:lang="en">
<term>SARS Virus</term>
</keywords>
<keywords scheme="MESH" qualifier="pathogénicité" xml:lang="fr">
<term>Virus du SRAS</term>
</keywords>
<keywords scheme="MESH" qualifier="physiologie" xml:lang="fr">
<term>Cysteine endopeptidases</term>
<term>Protéines virales</term>
<term>Réplication virale</term>
<term>Virulence</term>
</keywords>
<keywords scheme="MESH" qualifier="physiology" xml:lang="en">
<term>Virulence</term>
<term>Virus Replication</term>
</keywords>
<keywords scheme="MESH" qualifier="virologie" xml:lang="fr">
<term>Chiroptera</term>
<term>Réservoirs d'agents pathogènes</term>
<term>Syndrome respiratoire aigu sévère</term>
<term>Zoonoses</term>
</keywords>
<keywords scheme="MESH" qualifier="virology" xml:lang="en">
<term>Chiroptera</term>
<term>Disease Reservoirs</term>
<term>Severe Acute Respiratory Syndrome</term>
<term>Zoonoses</term>
</keywords>
<keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr">
<term>Syndrome respiratoire aigu sévère</term>
<term>Zoonoses</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Amino Acid Sequence</term>
<term>Animals</term>
<term>Chlorocebus aethiops</term>
<term>HEK293 Cells</term>
<term>Host Specificity</term>
<term>Host-Pathogen Interactions</term>
<term>Humans</term>
<term>Phylogeny</term>
<term>Sequence Homology, Amino Acid</term>
<term>Vero Cells</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr">
<term>Animaux</term>
<term>Cellules HEK293</term>
<term>Cellules Vero</term>
<term>Humains</term>
<term>Interactions hôte-pathogène</term>
<term>Phylogénie</term>
<term>Similitude de séquences d'acides aminés</term>
<term>Spécificité d'hôte</term>
<term>Séquence d'acides aminés</term>
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<front>
<div type="abstract" xml:lang="en">
<p>SARS-coronavirus (CoV) is a zoonotic agent derived from rhinolophid bats, in which a plethora of SARS-related, conspecific viral lineages exist. Whereas the variability of virulence among reservoir-borne viruses is unknown, it is generally assumed that the emergence of epidemic viruses from animal reservoirs requires human adaptation. To understand the influence of a viral factor in relation to interspecies spillover, we studied the papain-like protease (PLP) of SARS-CoV. This key enzyme drives the early stages of infection as it cleaves the viral polyprotein, deubiquitinates viral and cellular proteins, and antagonizes the interferon (IFN) response. We identified a bat SARS-CoV PLP, which shared 86% amino acid identity with SARS-CoV PLP, and used reverse genetics to insert it into the SARS-CoV genome. The resulting virus replicated like SARS-CoV in Vero cells but was suppressed in IFN competent MA-104 (3.7-fold), Calu-3 (2.6-fold) and human airway epithelial cells (10.3-fold). Using ectopically-expressed PLP variants as well as full SARS-CoV infectious clones chimerized for PLP, we found that a protease-independent, anti-IFN function exists in SARS-CoV, but not in a SARS-related, bat-borne virus. This PLP-mediated anti-IFN difference was seen in primate, human as well as bat cells, thus independent of the host context. The results of this study revealed that coronavirus PLP confers a variable virulence trait among members of the species SARS-CoV, and that a SARS-CoV lineage with virulent PLPs may have pre-existed in the reservoir before onset of the epidemic.</p>
</div>
</front>
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<li>District de Cologne</li>
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<li>Rhénanie-du-Nord-Westphalie</li>
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